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Pacific Biosciences of California, Inc.: Q3 FY2026 earnings call

What management said about Q3 FY2026, from the documents filed with the SEC on 4 November 2026: press release. Guidance figures: 1 narrowed. The quarter’s numbers.

Key takeaways

  • Revenue rose to $40.6 million: Total revenue was $40.6 million, up from $38.4 million in the third quarter of 2025 and $39.0 million in the second quarter of 2026. Nine-month revenue was $116.7 million, against $115.4 million a year earlier. Source
  • Non-GAAP net loss $32.8 million: GAAP net loss was $37.8 million, against $38.0 million. Non-GAAP net loss was $32.8 million, against $36.8 million. Per share, GAAP net loss was $0.12 and non-GAAP net loss was $0.11. Source
  • SPRQ-Nx adoption built through quarter: Over half of Revio consumables revenue was tied to SPRQ-Nx. Two-thirds of the Revio installed base opted to upgrade software for SPRQ-Nx by the end of the quarter. Source
  • Gross margin fell on memory and Vega costs: Non-GAAP gross margin was 36%, against 42% a year earlier. GAAP gross margin was 33%, against 41%. Management attributed the non-GAAP decline primarily to higher memory costs and Vega manufacturing transition costs. Source
  • Operating expenses fell on lower personnel: Non-GAAP operating expenses were $47.0 million, against $53.9 million. GAAP operating expenses were $50.5 million, against $54.8 million. Source
  • Cash balance ended at $199.4 million: Cash, cash equivalents and investments ended the quarter at $199.4 million, against $298.7 million a year earlier and $236.9 million at June 30, 2026. Source
  • CFO stepped down, interim CFO named: Jim Gibson stepped down as CFO. President and CEO Mark Van Oene was appointed interim CFO while the company searches for a new CFO. Source

“PacBio is entering an exciting phase as the investments we’ve made in our technology begin to unlock new opportunities,”

Mark Van Oene, President and Chief Executive Officer

Guidance

AreaPeriodFigureAgainst last quarter
Revenue Sourcefull year 2026$155 million to $160 millionNarrowed, top end cut from $155 million to $165 million

What changed from last quarter

  • Guidance lowered: Upper end of the full-year 2026 revenue range reduced from $165 million to $160 million; low end kept at $155 million. Source
  • Ended: Jim Gibson stepped down as Chief Financial Officer. Source
  • New: Mark Van Oene was appointed interim CFO and Bill Meyer was appointed Chief Accounting Officer. Source
  • New: Partnership with GeneDx to add long-read whole genome sequencing to its genome testing portfolio. Source
  • New: Multi-year strategic collaboration with Verily Health combining HiFi long-read data with real-world clinical data. Source
  • New: Collaboration with TychoBio to generate full-length RNA datasets using HiFi and Kinnex sequencing. Source
  • New: SPRQ-Nx launched for the Vega system in late August. Source

Results and growth drivers

  • Revenue rose to $40.6 million: Total revenue was $40.6 million, up from $38.4 million in the third quarter of 2025 and $39.0 million in the second quarter of 2026. Nine-month revenue was $116.7 million, against $115.4 million a year earlier. Source
  • Instruments up, consumables down: Instrument revenue was $13.2 million, against $11.3 million. Consumable revenue was $20.8 million, against $21.3 million. Service and other revenue was $6.6 million, against $5.8 million. Source
  • Non-GAAP net loss $32.8 million: GAAP net loss was $37.8 million, against $38.0 million. Non-GAAP net loss was $32.8 million, against $36.8 million. Per share, GAAP net loss was $0.12 and non-GAAP net loss was $0.11. Source

Products and customer adoption

  • SPRQ-Nx adoption built through quarter: Over half of Revio consumables revenue was tied to SPRQ-Nx. Two-thirds of the Revio installed base opted to upgrade software for SPRQ-Nx by the end of the quarter. Source
  • Vega sales went to new customers: More than 90% of Vega systems delivered in the quarter were sold to new customers. SPRQ-Nx for Vega launched in late August. Source

“SPRQ-Nx is changing the economics of HiFi sequencing, while growing clinical adoption and strategic collaborations in population genomics and AI are expanding the markets we can serve.”

Mark Van Oene, President and Chief Executive Officer

Costs, margins and one-time items

  • Gross margin fell on memory and Vega costs: Non-GAAP gross margin was 36%, against 42% a year earlier. GAAP gross margin was 33%, against 41%. Management attributed the non-GAAP decline primarily to higher memory costs and Vega manufacturing transition costs. Source
  • Operating expenses fell on lower personnel: Non-GAAP operating expenses were $47.0 million, against $53.9 million. GAAP operating expenses were $50.5 million, against $54.8 million. Source
  • Restructuring charges rose on 2026 plan: Restructuring and related charges were about $3.0 million in the quarter, against $0.1 million a year earlier. They mainly comprise severance under the 2026 plan and are excluded from non-GAAP results. Source
  • Share-based compensation declined: Non-cash share-based compensation within operating expenses was $8.0 million in the third quarter of 2026, against $10.1 million a year earlier. Source
  • Nine-month settlement and asset-sale gain: Nine-month results include a $15.4 million settlement charge with Personal Genomics of Taiwan and a $45.8 million gain on disposal of short-read assets. Source

Collaborations and clinical programs

  • GeneDx adds long-read sequencing to testing: The GeneDx partnership adds long-read whole genome sequencing to its genome testing portfolio. Management expects it to deepen PacBio's role in rare disease and clinical work. Source
  • Veterans Affairs awards Sampled contract: The Department of Veterans Affairs awarded Sampled, a Revio customer, a five-year contract for long-read genomics analyses for the Million Veteran Program. Source
  • Verily Health population data collaboration: A multi-year collaboration with Verily Health pairs HiFi long-read data with real-world clinical data for discovery and AI model training on Verily’s Workbench platform. Source
  • Berry Genomics birth defects study: The Berry Genomics Birth Defects Project in China is expected to place HiFi genome sequencing at the center of large-scale research in the region. Source
  • TychoBio RNA datasets for AI: The TychoBio collaboration will generate full-length RNA datasets with HiFi and Kinnex. Management expects the data to train AI models on RNA therapy efficacy and off-target effects. Source

“my focus is clear: sharpen our execution, prioritize what matters most, and translate the strength of our technology into sustainable growth”

Mark Van Oene, President and Chief Executive Officer

Cash, balance sheet and capital

  • Cash balance ended at $199.4 million: Cash, cash equivalents and investments ended the quarter at $199.4 million, against $298.7 million a year earlier and $236.9 million at June 30, 2026. Source
  • Convertible notes and stockholders' deficit: Convertible senior notes, net were $643.1 million at September 30, 2026. Stockholders' equity was a deficit of $61.4 million, against equity of $5.3 million at December 31, 2025. Source
  • Inventory and receivables increased: Inventory, net was $60.3 million, up from $49.3 million at December 31, 2025. Accounts receivable, net was $38.3 million, up from $35.4 million. Source

Leadership changes

  • CFO stepped down, interim CFO named: Jim Gibson stepped down as CFO. President and CEO Mark Van Oene was appointed interim CFO while the company searches for a new CFO. Source
  • Chief Accounting Officer appointed: Bill Meyer was appointed Chief Accounting Officer as part of the same leadership change. Source

Coming up, as management said on 4 November 2026

  • Search for new CFO: Management said the company is engaging in a search for a new CFO, with Mark Van Oene serving as interim CFO in the meantime. Source
  • Verily datasets for AI model training: Management expects the Verily datasets to support discovery and AI model training on Verily’s Workbench platform, which serves more than 20,000 researchers. No date is given. Source

Figures management reported

FigureReported
Revio system placements Source15 (13 in third quarter of 2025)
Vega system placements Source35 (32 in third quarter of 2025)
Annualized Revio pull-through per system Source~$204,000 (~$236,000 in third quarter of 2025)

Risks management discussed

  • Operational: Management named higher memory costs and Vega manufacturing transition costs as the primary drivers of the non-GAAP gross margin decline. Source

Earlier plans management reported on

  • Not stated: Management ties lower personnel expenses to restructuring initiatives. The release does not state progress against a stated target. Source

Other quarters

Summarised with AI from the documents the company filed with the SEC. Every point is checked against the filing before it is shown: management’s own words word for word, figures against the line or table row they come from. A point that fails the check is left out. Source opens the filing at that line.